Generate HTML Report

The plot function will create a HTML report with plots of the contents of a Fleet object. Plotting a Fleet object also requires a Stock object as the second argument.

For example, running the plot function on the example Generic_DecE Fleet object:

plot(Generic_DecE, Albacore)

will create this HTML report.

See the help documentation or type ?plot.Fleet in the R console for more information on plotting Fleet objects.

Plot Stock Components

Individual plots of the components in the Fleet object can be generated using the plot function and specifying the name of the component to plot in the first argument and a stock object as the second argument.

The options for plotting the components are shown by clicking the buttons below.

plot('Catchability', Generic_DecE, Albacore)

plot('Effort', Generic_DecE, Albacore)

plot('Selectivity', Generic_DecE, Albacore)

plot('MPA', Generic_DecE, Albacore)

Unlike plot(Fleet, Stock) which generates a HTML report that opens in the web browser, plot('character', Fleet, Stock) will create the plots in the R console. See the help documentation or type ?plot.Fleet in the R console for more information on plotting Fleet objects.