Data

The Data object at the end of the historical period

OMPars

A numeric data.frame with nsim rows with sampled Stock, Fleet, Obs, and Imp parameters.

AtAge

A named list with arrays of dimensions: c(nsim, maxage+1, nyears+proyears) or c(nsim, maxage+1, nyears, nareas) nyears+proyears)’ or c(nsim, maxage+1, nyears, nareas)

• Length: Length-at-age for each simulation, age, and year

• Weight: Weight-at-age for each simulation, age, and year

• Select: Selectivity-at-age for each simulation, age, and

• Retention: Retention-at-age for each simulation, age, and

• Maturity: Maturity-at-age for each simulation, age, and

• N.Mortality: Natural mortality-at-age for each

• Z.Mortality: Total mortality-at-age for each simulation,

• F.Mortality: Fishing mortality-at-age for each

• Fret.Mortality: Fishing mortality-at-age for retained

• Number: Total numbers by simulation, age, year and area

• Biomass: Total biomass by simulation, age, year and area

• VBiomass: Vulnerable biomass by simulation, age, year and

• SBiomass: Spawning biomass by simulation, age, year and

• Removals: Removals (biomass) by simulation, age, year and

• Landings: Landings (biomass) by simulation, age, year and

• Discards: Discards (biomass) by simulation, age, year and

TSdata

A named list with population and fleet dynamics:

• Number: Total numbers; array dimensions c(nsim, nyears, nareas)

• Biomass: Total biomass; array dimensions c(nsim, nyears, nareas)

• VBiomass: Vulnerable biomass; array dimensions c(nsim, nyears, nareas)

• SBiomass: Spawning Biomass; array dimensions c(nsim, nyears, nareas)

• Removals: Removals (biomass); array dimensions c(nsim, nyears, nareas)

• Landings: Landings (biomass); array dimensions c(nsim, nyears, nareas)

• Discards: Discards (biomass); array dimensions c(nsim, nyears, nareas)

• Find: Historical fishing mortality (scale-free); matrix

• RecDev: Recruitment deviations (historical and

• Unfished_Equilibrium: A named list with unfished

Ref

A named list with biological reference points:

• ByYear: A named list with asymptotic reference points

• N0: Asymptotic unfished total number

• SN0: Asymptotic unfished spawning number

• B0: Asymptotic unfished total biomass

• SSB0: Asymptotic unfished spawning biomass

• VB0: Asymptotic unfished vulnerable biomass

• MSY: Asymptotic MSY

• FMSY: Fishing mortality corresponding with asymptotic

• SSBMSY: Spawning stock biomass corresponding with

• BMSY: total biomass corresponding with asymptotic MSY

• VBMSY: Vulnerable biomass corresponding with

• Dynamic_Unfished: A named list with dynamic unfished

• N0: Unfished total numbers

• B0: Unfished total biomass

• SN0: Unfished spawning numbers

• SSB0: Unfished spawning biomass

• VB0: Unfished vulnerable biomass

• Rec: Unfished recruitment

• ReferencePoints: A data.frame with nsim rows with with

• N0: Average unfished numbers

• B0: Average unfished biomass

• SSB0: Average unfished spawning biomass (used to

• SSN0: Average unfished spawning numbers

• VB0: Average unfished vulnerable biomass (used to

• MSY: Average maximum sustainable yield (equilibrium)

• FMSY: Average fishing mortality corresponding with

• SSBMSY: Average spawning stock biomass corresponding

• BMSY: Average total biomass corresponding with MSY

• VBMSY: Average vulnerable biomass corresponding with

• UMSY: Average exploitation rate corresponding with

• FMSY_M: Average FMSY/M ratio

• SSBMSY_SSB0: Average ratio of SSBMSY to SSB0

• BMSY_B0: Average ratio of BMSY to B0

• VBMSY_VB0: Average ratio of VBMSY to VB0

• RefY: Maximum yield obtained in forward projections

SampPars

A named list with all sampled Stock, Fleet, Obs, and Imp parameters

OM

The OM object (without cpars)

Misc

A list for additional information