The MSE object has 29 slots. As it is an S4 object the slots are accessed with the @ symbol, e.g., MSE@Name.
proyears
The number of years for the projections - closed loop simulations. Single value. Positive integer
OM
Operating model parameters (last historical year used for time-varying parameters). Data.frame with nsim rows
Obs
Observation parameters (last historical year used for time-varying parameters). Data.frame with nsim rows
SB_SBMSY
Simulated spawning biomass relative to spawning BMSY over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
F_FMSY
Simulated fishing mortality rate relative to FMSY over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
N
Simulated total numbers over the projection. An array with dimensions: nsim, maxage+1, nMPs, proyears, nareas. Non-negative real numbers.
B
Simulated stock biomass over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
SSB
Simulated spawning stock biomass over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
VB
Simulated vulnerable biomass over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
FM
Simulated fishing mortality rate over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
Catch
Simulated catches (landings) over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
Removals
Simulated removals (catch + discards) over the projection. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
Effort
Simulated relative fishing effort in the projection years. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
TAC
Simulated Total Allowable Catch prescribed by MPs. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
TAE
Simulated Total Allowable Effort prescribed by MPs. An array with dimensions: nsim, nMPs, proyears. Non-negative real numbers
RefPoint
Named list of annual MSY reference points MSY, FMSY, and SBMSY. Array with dimensions: nsim, nMPs, nyears+proyears. Will be the same as Hist@Ref$ByYear unless selectivity is changed by MP
CB_hist
Simulated catches (landings) from the spool-up period. An array with dimensions: nsim, nyears. Non-negative real numbers
FM_hist
Simulated fishing mortality rate from the spool-up period. An array with dimensions: nsim, nyears Non-negative real numbers
SSB_hist
Simulated spawning stock biomass from the spool-up period. An array with dimensions: nsim, nyears. Non-negative real numbers
Hist
Information from the historical spool-up period. Object of class Hist . Only returned if extended=TRUE in runMSE